Gytis Dudas

Research Interests

Publications

Total publications: 19

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.: Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A & Lemey P (2018) Nature Communications 9, 2222.

Erratum: Correction: MERS-CoV spillover at the camel-human interface (eLife (2018) 7 PII: e37324).: Dudas G, Carvalho LM, Rambaut A & Bedford T (2018) eLife 7

MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity.: Chu DKW, Hui KPY, Perera RAPM, Miguel E, Niemeyer D, Zhao J, Channappanavar R, Dudas G, Oladipo JO, Traor? A, Fassi-Fihri O, Ali A, Demissi? GF, Muth D, Chan MCW, Nicholls JM, Meyerholz DK, Kuranga SA, Mamo G, Zhou Z, So RTY, Hemida MG, Webby RJ, Roger F, Rambaut A, Poon LLM, Perlman S, Drosten C, Chevalier V & Peiris M (2018) Proceedings of the National Academy of Sciences of the United States of America 115, 3144-3149.

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors.: Whitmer SLM, Ladner JT, Wiley MR, Patel K, Dudas G, Rambaut A, Sahr F, Prieto K, Shepard SS, Carmody E, Knust B, Naidoo D, Deen G, Formenty P, Nichol ST, Palacios G, Str?her U & Ebola Virus Persistence Study Group (2018) Cell Reports 22, 1159-1168.

MERS-CoV spillover at the camel-human interface.: Dudas G, Carvalho LM, Rambaut A & Bedford T (2018) eLife 7, e31257.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.: Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, ..., Rambaut A, ..., Bedford T, Pybus OG, Isern S, Palacios GF & Andersen KG (2017) Nature 546, 401-405.

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.: Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, ..., Suchard MA, Lemey P & Rambaut A (2017) Nature 2017/04/12/online

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.: Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels RS, Russell CA, Pybus OG, McCauley J, Kellam P & Watson SJ (2017) PLoS pathogens 13, e1006749.

The Evolution of Ebola virus: Insights from the 2013-2016 Epidemic.: Holmes EC, Dudas G, Rambaut A & Andersen KG (2016) Nature 538, 193-200.

Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences".: Rambaut A, Dudas G, Carvalho LM, Park DJ, Yozwiak NL, Holmes EC & Andersen KG (2016) Science 353, 658.

MERS-CoV recombination: implications about the reservoir and potential for adaptation.: Dudas G & Rambaut A (2016) Virus Evolution 2, vev023.

Real-time, portable genome sequencing for Ebola surveillance.: Quick J, Loman NJ, Duraffour S, Simpson JT, Severi E, Cowley L, Bore JA, Koundouno R, Dudas G, Mikhail A, Ouédraogo N, Afrough B, Bah A, Baum JHJ, Becker-Ziaja B, Boettcher JP, Cabeza-Cabrerizo M, Camino-Sánchez Á, Carter LL, Doerrbecker J, Enkirch T, Dorival IG, Hetzelt N, Hinzmann J, Holm T, Kafetzopoulou LE, Koropogui M, Kosgey A, Kuisma E, Logue CH, Mazzarelli A, Meisel S, Mertens M, Michel J, Ngabo D, Nitzsche K, Pallasch E, Patrono LV, Portmann J, Repits JG, Rickett NY, Sachse A, Singethan K, Vitoriano I, Yemanaberhan RL, Zekeng EG, Racine T, Bello A, Sall AA, Faye O, Faye O, Magassouba NF, Williams CV, Amburgey V Winona L Davis E Gerlach J Washington F Monteil V Jourdain M Bererd M Camara A, Somlare H, Camara A, Gerard M, Bado G, Baillet B, Delaune D, Nebie KY, Diarra A, Savane Y, Pallawo RB, Gutierrez GJ, Milhano N, Roger I, Williams CJ, Yattara F, Lewandowski K, Taylor J, Rachwal P J., Turner D, Pollakis G, Hiscox JA, Matthews DA, Shea MKO, Johnston AM, Wilson D, Hutley E, Smit E, Di Caro A, Wölfel R, Stoecker K, Fleischmann E, Gabriel M, Weller SA, Koivogui L, Diallo B, Keïta S, Rambaut A, Formenty P, Günther S & Carroll MW (2016) Nature 530, 228-232.

Evolution and Spread of Ebola Virus in Liberia, 2014-2015.: Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, Park DJ, Sabeti PC, Rambaut A, Sanchez-Lockhart M, Bolay FK, Kugelman JR & Palacios, G (2015) Cell Host and Microbe 18, 659-669.

Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone.: Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, Nosamiefan D, Yozwiak NL, Moses LM, Jiang PP, Lin AE, Schaffner SF, Bird B, Towner J, Mamoh M, Gbakie M, Kanneh L, Kargbo D, Massally JL, Kamara FK, Konuwa E, Sellu J, Jalloh AA, Mustapha I, Foday M, Yillah M, Erickson BR, Sealy T, Blau D, Paddock C, Brault A, Amman B, Basile J, Bearden S, Belser J, Bergeron E, Campbell S, Chakrabarti A, Dodd K, Flint M, Gibbons A, Goodman C, Klena J, McMullan L, Morgan L, Russell B, Salzer J, Sanchez A, Wang D, Jungreis I, Tomkins-Tinch C, Kislyuk A, Lin MF, Chapman S, MacInnis B, Matthews A, Bochicchio J, Hensley LE, Kuhn JH, Nusbaum C, Schieffelin JS, Birren BW, Forget M, Nichol ST, Palacios GF, Ndiaye D, Happi C, Gevao SM, Vandi MA, Kargbo B, Holmes EC, Bedford T, Gnirke A, Ströher U, Rambaut A, Garry RF & Sabeti PC (2015) Cell 161, 1516-1526.

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa.: Carroll MW, Matthews DA, Hiscox JA, Elmore MJ, Pollakis G, Rambaut A, Hewson R, García-Dorival I, Bore JA, Koundouno R, Abdellati S, Afrough B, Aiyepada J, Akhilomen P, Asogun D, Atkinson B, Badusche M, Bah A, Bate S, Baumann J, Becker D, Becker-Ziaja B, Bocquin A, Borremans B, Bosworth A, Boettcher JP, Cannas A, Carletti F, Castilletti C, Clark S, Colavita F, Diederich S, Donatus A, Duraffour S, Ehichioya D, Ellerbrok H, Fernandez-Garcia MD, Fizet A, Fleischmann E, Gryseels S, Hermelink A, Hinzmann J, Hopf-Guevara U, Ighodalo Y, Jameson L, Kelterbaum A, Kis Z, Kloth S, Kohl C, Korva M, Kraus A, Kuisma E, Kurth A, Liedigk B, Logue CH, Lüdtke A, Maes P, McCowen J, Mély S, Mertens M, Meschi S, Meyer B, Michel J, Molkenthin P, Muñoz-Fontela C, Muth D, Newman EN, Ngabo D, Oestereich L, Okosun J, Olokor T, Omiunu R, Omomoh E, Pallasch E, Pályi B, Portmann J, Pottage T, Pratt C, Priesnitz S, Quartu S, Rappe J, Repits J, Richter M, Rudolf M, Sachse A, Schmidt KM, Schudt G, Strecker T, Thom R, Thomas S, Tobin E, Tolley H, Trautner J, Vermoesen T, Vitoriano I, Wagner M, Wolff S, Yue C, Capobianchi MR, Kretschmer B, Hall Y, Kenny JG, Rickett NY, Dudas G, Coltart CE, Kerber R, Steer D, Wright C, Senyah F, Keita S, Drury P, Diallo B, de Clerck H, Van Herp M, Sprecher A, Traore A, Diakite M, Konde MK, Koivogui L, Magassouba N, Av?i?-?upanc T, Nitsche A, Strasser M, Ippolito G, Becker S, Stoecker K, Gabriel M, Raoul H, Di Caro A, Wölfel R, Formenty P & Günther S (2015) Nature 524, 97-101.

Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1-PB2-HA Gene Complex.: Dudas G, Bedford T, Lycett S & Rambaut A (2015) Mol Biol Evol 32, 162-172.

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak.: Gire SK, Goba A, Andersen KG, Sealfon RSG, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, Malboeuf CM, Qu J, Gladden AD, Schaffner SF, Yang X, Jiang P-P, Nekoui M, Colubri A, Coomber MR, Fonnie M, Moigboi A, Gbakie M, Kamara FK, Tucker V, Konuwa E, Saffa S, Sellu J, Jalloh AA, Kovoma A, Koninga J, Mustapha I, Kargbo K, Foday M, Yillah M, Kanneh F, Robert W, Massally JLB, Chapman SB, Bochicchio J, Murphy C, Nusbaum C, Young S, Birren BW, Grant DS, Scheiffelin JS, Lander ES, Happi C, Gevao SM, Gnirke A, Rambaut A, Garry RF, Khan SH & Sabeti PC. (2014) Science 345, 1369-1372.

Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak.: Dudas G & Rambaut A (2014) PLoS Currents: Outbreaks 6

Integrating influenza antigenic dynamics with molecular evolution.: Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ & Rambaut A (2014) eLife 3, e01914.