Trevor Bedford

For more information, please go to Trevor's website at www.trevorbedford.com.

Total publications: 19

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.: Konings F, Perkins MD, Kuhn JH, Pallen MJ, Alm EJ, Archer BN, Barakat A, Bedford T, Bhiman JN, Caly L, Carter LL, Cullinane A, de Oliveira T, Druce J, El Masry I, Evans R, Gao GF, Gorbalenya AE, Hamblion E, Herring BL, Hodcroft E, Holmes EC, Kakkar M, Khare S, Koopmans MPG, Korber B, Leite J, MacCannell D, Marklewitz M, Maurer-Stroh S, Rico JAM, Munster VJ, Neher R, Munnink BO, Pavlin BI, Peiris M, Poon L, Pybus O, Rambaut A, Resende P, Subissi L, Thiel V, Tong S, van der Werf S, von Gottberg A, Ziebuhr J & Van Kerkhove MD (2021) Nature Microbiology 6, 821-823.

Ebola virus transmission initiated by relapse of systemic Ebola virus disease.: Mbala-Kingebeni P, Pratt C, Mutafali-Ruffin M, Pauthner MG, Bile F, Nkuba-Ndaye A, Black A, Kinganda-Lusamaki E, Faye M, Aziza A, Diagne MM, Mukadi D, White B, Hadfield J, Gangavarapu K, Bisento N, Kazadi D, Nsunda B, Akonga M, Tshiani O, Misasi J, Ploquin A, Epaso V, Sana-Paka E, N?kasar YTT, Mambu F, Edidi F, Matondo M, Bula JB, Diallo B, Keita M, Belizaire MRD, Fall IS, Yam A, Mulangu S, Rimion AW, Salfati E, Torkamani A, Suchard MA, Crozier I, Hensley L, Rambaut A, Faye O, Sall A, Sullivan NJ, Bedford T, Andersen KG, Wiley MR, Ahuka-Mundeke S & Tamfum J-JM (2021) New England Journal of Medicine 384, 1240-1247.

Erratum: Correction: MERS-CoV spillover at the camel-human interface (eLife (2018) 7 PII: e37324).: Dudas G, Carvalho LM, Rambaut A & Bedford T (2018) eLife 7

Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza.: Cybis GB, Sinsheimer JS, Bedford T, Rambaut A, Lemey P & Suchard MA (2018) Statistics in Medicine 37, 195-206.

MERS-CoV spillover at the camel-human interface.: Dudas G, Carvalho LM, Rambaut A & Bedford T (2018) eLife 7, e31257.

Establishment and cryptic transmission of Zika virus in Brazil and the Americas.: Faria NR, Quick J, Morales I, Theze J, ..., Rambaut A, Bedford T, ..., Loman N. & Pybus OG (2017) Nature 546, 406-410.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.: Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, ..., Rambaut A, ..., Bedford T, Pybus OG, Isern S, Palacios GF & Andersen KG (2017) Nature 546, 401-405.

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.: Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, ..., Suchard MA, Lemey P & Rambaut A (2017) Nature 2017/04/12/online

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.: Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels RS, Russell CA, Pybus OG, McCauley J, Kellam P & Watson SJ (2017) PLoS pathogens 13, e1006749.

Persistent HIV-1 replication maintains the tissue reservoir during therapy.: Lorenzo-Redondo R, Fryer HR, Bedford T, Kim E, Archer J, Kosakovsky Pond, SL, Chung Y, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH, Rambaut A, Haase AT, McLean AR & Wolinsky SM (2016) Nature 530, 51-56.

Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone.: Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, Nosamiefan D, Yozwiak NL, Moses LM, Jiang PP, Lin AE, Schaffner SF, Bird B, Towner J, Mamoh M, Gbakie M, Kanneh L, Kargbo D, Massally JL, Kamara FK, Konuwa E, Sellu J, Jalloh AA, Mustapha I, Foday M, Yillah M, Erickson BR, Sealy T, Blau D, Paddock C, Brault A, Amman B, Basile J, Bearden S, Belser J, Bergeron E, Campbell S, Chakrabarti A, Dodd K, Flint M, Gibbons A, Goodman C, Klena J, McMullan L, Morgan L, Russell B, Salzer J, Sanchez A, Wang D, Jungreis I, Tomkins-Tinch C, Kislyuk A, Lin MF, Chapman S, MacInnis B, Matthews A, Bochicchio J, Hensley LE, Kuhn JH, Nusbaum C, Schieffelin JS, Birren BW, Forget M, Nichol ST, Palacios GF, Ndiaye D, Happi C, Gevao SM, Vandi MA, Kargbo B, Holmes EC, Bedford T, Gnirke A, Ströher U, Rambaut A, Garry RF & Sabeti PC (2015) Cell 161, 1516-1526.

Global circulation patterns of seasonal influenza viruses vary with antigenic drift.: Bedford T, Riley S, Barr I, Broor S, Chadha M, Cox N, Daniels R, Gunasekaran C, Hurt A, Kelso A, Klimov A, Lewis N, Li X, McCauley J, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith D, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P & Russell C (2015) Nature 523, 217-220.

Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1-PB2-HA Gene Complex.: Dudas G, Bedford T, Lycett S & Rambaut A (2015) Mol Biol Evol 32, 162-172.

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: Applications to viral and host phenotypic evolution.: Vrancken B, Lemey P, Rambaut A, Bedford T, Longdon B, Günthard HF & Suchard MA (2015) Methods in Ecology and Evolution 6, 67-82.

The hidden history of HIV-1: establishment and early spread of the AIDS pandemic.: Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG & Lemey P (2014) Science 346, 56-61.

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.: Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, Russell CA, Smith DJ, Pybus OG, Brockmann D & Suchard MA (2014) PLoS Pathogens 10, e1003932.

Integrating influenza antigenic dynamics with molecular evolution.: Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ & Rambaut A (2014) eLife 3, e01914.

Canalization of the evolutionary trajectory of the human influenza virus.: Bedford T, Rambaut A & Pascual M (2012) BMC Biol 10, 38.

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty.: Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA & Alekseyenko AV (2012) Mol Biol Evol 29, 2157-2167.